|

cwb_clonedir
~~~~~~~~~~~~~~~~~

This page provides a description of the cwb_clonedir command.

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| **Usage**
|
|  This command creates the working directory by copying files and folders from another working environment.
| 
|
| **Syntax**
|

 - ``cwb_clonedir`` (without arguments)
    Prints help
 - ``cwb_clonedir src_dir dest_dir [options]``
    Creates the dest_dir folder and copies in it the working environment of the src_dir directory.

| 
| **Furher information**
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|  The following options can be passed to cwb_clonedir:
|

 .. code-block:: bash

    options =   '--output links'  : it creates symbolic links to the files in the src_dir output directory
                                    underneath the dest_dir output directory. The link data_label points to 
                                    the data_label folder in dest_dir. In case dest_dir is already 
                                    existing, the option just updates the links.
                
                '--output merge'  : it searches in src_dir for the merged file with the largest progressive 
                                    version number and merges the wave and live trees in the dest_dir 
                                    output folder.
                                    In case dest_dir is already existing, the option just creates 
                                    the merged files.
                                    Comment :  this option cannot be used for merged files 
                                    to which cuts and vetoes have been applied.                                

                '--config check'  : it checks whether the configuration files in src_dir are compatible with 
                                    the config files in dest_dir

                '--jstage stage'  : it creates symbolic links only to the output files of 
                                    the desired analysis stage.
                                    The links are created in the output directory.
                                    [FULL/INIT/STRAIN/CSTRAIN/COHERENCE/SUPERCLUSTER(default)/LIKELIHOOD]

                '--simulation false/true'  : use false(default)/true for background/simulation runs 

                '--label LABEL'   : is the label of the merged root files  (Ex: M2.C_rho_gt_8)

                '--chunk id'      : id is a chunk number (must be integer > 0). 
                                    It must be used to select a specific chunk root version generated 
                                    with cwb_setchunk command  
                                    NOTE : --chunk option can not be used when --label option is used !!!
                                          

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| **Examples**
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 -  The following command line creates the folder S6A_BKG_L1H1V1_run1 and copies the environment in /home/PRODUCTION/S6A_BKG_L1H1V1_run1 :
     ``cwb_clonedir /home/PRODUCTION/S6A_BKG_L1H1V1_run1 S6A_BKG_L1H1V1_run1``
 -  The following command line creates symbolic links to the files in the output directory in /home/PRODUCTION/S6A_BKG_L1H1V1_run1 S6A_BKG_L1H1V1_run1 :
     ``cwb_clonedir /home/PRODUCTION/S6A_BKG_L1H1V1_run1 S6A_BKG_L1H1V1_run1 '--output links'``
 -  The following command line creates a new directory and calls it as the cloned directory:
     ``cwb_clonedir /home/PRODUCTION/S6A_BKG_L1H1V1_run1 .``